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J. Tinsley Oden Publications

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Conference proceedings - Reports - Refereed Journal Publications

2007 Publications

• Bajaj, C.; Oden, J.T.; Diller, K.R.: Browne, J.C.; Hazle, J.; Babuska, I.; Bass, J.; Bidaut, L.; Demkowicz, L.; Staffon, R.J.; and Zhang, Y. “Using Cyber-Infrastructure for Dynamic Data Driven Laser Treatment of Cancer”, International Conference on Computational Science, ICCS 2007, Editors: Y. Shi et al., Springer-Verlag Berlin Heidelberg, Part I, LNCS 4487, pp. 972-979, 2007.
• Bauman, Paul. T.; Bass, J.; Oden, J. T.; and Prudhomme, S. "Adaptive multiscale modeling of polymers with Arlequin coupling," Presented at the Ninth U.S. National Congress on Computational Mechanics, San Francisco, California, July 23-26, 2007.
• Bauman, Paul T.; Ben Dhia, Hachmi; Elkodja, Nadia; Oden, J. Tinsley; and Prudhomme, Serge. "On the Application of the Arlequin Method to the Coupling of Particle and Continuum Models", Computational Mechanics, (accepted).
• Feng, Y.; Fuentes, D.; Hawkins, A.; Bass, J.; Rylander, M. N.; Elliott, A.; Shetty, A.; Stafford, R. J.; and Oden, J.T. "Nanoshell-Mediated Laser Surgery Simulation for Prostate Cancer Treatment," Engineering with Computers, (accepted).
• Feng, Yusheng; Oden, J. Tinsley; and Rylander, Marissa Nichole. "A Statistical Thermodynamics Based Model for Cell Damage and its Validation in vitro," in Biophysics Journal, (submitted).
• Oden, J. Tinsley. "A Dynamic Data-Driven System for Laser Treatment of Cancer," presentation given at the SC06 Conference, Tampa, Florida, November 11-17, 2006.
• Oden, J. Tinsley. "Historical Comments on Finite Elements", originally published as "A History of Scientific Computing," Edited by Stephen G. Nash, pp. 128-152,1990 Association for computing Machinery, Inc. reprinted by permission by Society for Industrial and Applied Mathematics, 2007.
• Oden, J.T.; Diller, K.; Bajaj, C.; Browne, J.C.; Hazle, J.; Babuska, I.; Bass, J.; Demkowicz, L.; Elliott, A.; Feng, Y.; Fuentes, David; Prudhomme, S.; Rylander, M.N.; Stafford, R.J.; Zhang, Y. "Dynamic Data-Driven Finite Element Models for Laser Treatment of Cancer", Journal of Numerical Methods in Partial Differential Equations, v. 23, Issue 4, pp. 904-922, 2007.
• Oden, J.T.; Diller, K.; Bajaj, C.; Browne, J.C.; Hazle, J.; Babuska, I.; Bass, J.; Demkowicz, L.; Feng, Y.; Fuentes, David; Prudhomme, S.; Rylander, M.N.; Stafford, R.J.; Zhang, Y. "Development of a Computational Paradigm for Laser Treatment of Cancer", paper presented at the International Conference on Computational Science, Advancing Science through Computation at the University of Reading, UK, May 28-31, 2006. Edited by V.N. Alexandrov, et.al., Lecture Notes in Computer Science, v. 3993, pp. 530-537, 2006.
• Oden, J. Tinsley; Prudhomme, S.; Bauman, P.T.; and Bass, J.M. "Adaptive Multi-Scale Modeling: Goals Algorithms for Adaptive Error Control" 17th US Army Symposium on Solid Mechanics, April 2-5, 2007.
• Oden, J. Tinsley; Prudhomme, S.; and Bauman, P. "Error control for molecular statics problems," International Journal for Multiscale Computational Engineering, v. 4, No 5-6, 647-662, 2007.
• Oden, J.T.; Prudhomme, S.; and Demkowicz, L. "A Posteriori Error Estimation for Acoustic Wave Propagation Problems", Archives of Computational Methods in Engineering, (in press).
• Oden, J. Tinsley; Willson, C. G.; Demkowicz, L.; Prudhomme, S.; Bass, J.; Bauman, P.; Jhurani, Y.; and Collister, E. "Error Estimation Improves Multiscale Models," on U.S. Department of Energy Office of Advanced Scientific Computing Research web site, May 2007.
• Prudhomme, S., Bauman, P., Ben Dhia, Hachmi; Elkhodja, Nadia; and Oden, J.T. "Adaptive Modeling for Atomistic-to-Continuum Coupling Methods, Invited presentation given at Mathematisches Forschungsinstitut Oberwolfach, Oberwolfach-Walke, Germany, June 10-16, 2007, Report No. 29/2007 Adaptive Numerical Methods for PDEs, organized by Rolf Rannacher, Endre Suli and Rudiger Verfurth.

2006 Publications

• Feng, Y.; Rylander, M.N.; Bass, J.; Oden, J.T.; Diller, K. "Optimal Design of Laser Surgery for Cancer Treatment Through Nanoparticle-Mediated Hyperthermia Therapy." Paper presented at BioNano 2005 Conference, held in Anaheim, CA, May 8-12, 2005, NSTI Nanotech 2006-Technical Proceedings, v. 1, pp. 39-42, 2006.
• Fuentes, D.; Littlefield, D.; Oden, J.T.; and Prudhomme, S. "Extensions of goal-oriented error estimation methods to simulations of highly-nonlinear response of shock-loaded estomer-reinforced structures," Computer Methods in Applied Mechanics and Engineering, John Argyrus Memorial Issue, v. 195, pp. 4659-4680, 2006.
• Oden, J.T. “Finite Elements of Nonlinear Continua”, reprint, Dover Publications, Inc. Mineola, N.Y. 2006.
• Oden, J.T.; Prudhomme, S.; Romkes, A.; and Bauman, P. "Multi-scale modeling of physical phenomena: Adaptive control of models," SIAM Journal on Scientific Computing, v. 28, no. 6, pp. 2359-2389, 2006.
• Oden, J.T.; Diller, K.R.; Bajaj, C.; Browne, J.C.; Hazle, J.; Babuska, I.; Bass, J.; Demkowicz, L.; Feng, Y.; Fuentes, D.; Prudhomme, S.; Rylander, M.N.; Stafford, R.J. and Zhang, Y. "Development of a Computational Paradigm for Laser Treatment of Cancer", Proceedings of the International Conference on Computational Science, Edited by V.N. Alexandrov, et al., c Springer-Verlag Berlin Heidelberg, ICCS 2006, Part III, Lecture Notes in Computer Science, Volume 3993, pp. 530-537, 2006.
• Prudhomme, Serge; Bauman, Paul T.; and Oden, J. Tinsley. "Error Control for Molecular Statics Problems", International Journal for Multiscale Computational Engineering, v.4, issue 5-6, pp. 647-662, 2006.
• Romkes, Albert; Oden, J. Tinsley; and Vemaganti, Kumar. "Multi-Scale Goal-Oriented Adaptive Modeling of Random Heterogeneous Materials," Mechanics of Materials, v. 38, pp. 859-872, 2006.
• Romkes, A.; Prudhomme, S.; and Oden, J. Tinsley. "Convergence analysis of a discontinuous finite element formulation based on second order derivatives," Computer Methods in Applied Mechanics and Engineering, Special issue on Discontinuous Galerkin Methods, v. 195, 3461-3482, 2006.

2005 Publications

• Babuska, Ivo and Oden, J. Tinsley. "The Reliability of Computer Predictions: can they be trusted?," International Journal of Numerical Analysis and Modeling, v.1, no. 1, pp. 1-18, 2005.
• Babuska, Ivo and Oden, J. Tinsley. "The Reliability of Computer Predictions: can they be trusted?," in ICES Report 05-10, The University of Texas at Austin, Institute for Computational Engineering and Sciences, Austin, Texas, February 2005.
• Feng, Y.; Rylander, M. N.; Bass, J.; Oden, J.T.; and Diller, K. "Optimal Design of Laser Surgery for Cancer Treatment Through Nanoparticle-Mediated Hyperthermia Therapy", paper presented at BioNano 2005 Conference, held in Anaheim, CA May 8-12, 2005.
• Fuentes, D.; Littlefield, D.; Oden J.T.; and Prudhomme, S. "Error Control in Finite Element Approximations of Nonlinear Problems in Mechanics," in Adaptive Modeling and Simulation 2005, P. Diez and N.E. Wiberg, Proceedings of the Second International Conference on Adaptive Modeling and Simulation, Barcelona, Spain, 8-10 September 2005, pp. 157-160, 2005.
• Fuenes, D.; Littlefield, D.; Oden J.T.; and Prudhomme, S. "Extensions of Goal-Oriented Error Estimation Methods to Simulations of Highly-Nonlinear Response of Shock-Loaded Elastomer-Reinforced Structures," in ICES Report 05-22, The University of Texas at Austin, Institute for Computational Engineering and Sciences, Austin, Texas, June 2005.
• Oden, J. Tinsley. "Lectures on an Introduction to Quantum Mechanics," in ICES Report 05-09, The University of Texas at Austin, Institute for Computational Engineering and Sciences, Austin, Texas, February 2005.
• Oden, J.T. "Theory and Methods for Multi-scale Modeling of Materials," McMat 2005 Proceedings, conference in Baton Rouge, LA on June 2, 2005
• Oden, J. Tinsley; Prudhomme, Serge; Romkes, Albert; and Bauman, Paul. "Multi-Scale Modeling of Physical Phenomena: Adaptive Control of Models." ICES Report 05-13, The University of Texas at Austin, Institute for Computational Engineering and Sciences, Austin, Texas, May 2005.
• Oden, J. Tinsley; Prudhomme, Serge; Romkes, Albert; and Bauman, Paul. "Multi-Scale Modeling of Physical Phenomena: Adaptive Control of Models. Second Edition." ICES Report 05-20, The University of Texas at Austin, Institute for Computational Engineering and Sciences, Austin, Texas, May 2005.
• Oden, J.T.; Babuska, Ivo; Nobile, F.; Feng, Yusheng; and Tempone, Raul. "Theory and Methodology for estimation and control of errors due to modeling, approximation, and uncertainty." MAFELAP 2003 Special Issue of Computer Methods in Applied Mechanics and Engineering, volume 194, issues 2-5, pp. 195-204, 2005.
• Oden, J.T.; Prudhomme, S.; and Bauman, P. "On the Extension of Goal-Oriented Error Estimation and Hierarchical Modeling to Discrete Lattice Methods", Computer Methods in Applied Mechanics and Engineering, v.194, pp. 3668-3688, 2005.
• Oden, J.T.; Prudhomme, S.; and Demkowicz, L. "A Posteriori Error Estimation for Acoustic Wave Propagation Problems", Archives of Computational Methods in Engineering, v. 12, no. 4, pp. 343-389, 2005.
• Oden, J. Tinsley; Prudhomme, Serge; Romkes, Albert; and Bauman, Paul. "Multi-Scale Modeling of Physical Phenomena: Adaptive Control of Models," in ICES Report 05-13, The University of Texas at Austin, Institute for Computational Engineering and Sciences, Austin, Texas, May 2005.
• Oden, J. Tinsley; Prudhomme, Serge; Romkes, Albert; and Bauman, Paul. "Multi-Scale Modeling of Physical Phenomena: Adaptive Control of Models”. Second Edition", in ICES Report 05-20, The University of Texas at Austin, Institute for Computational Engineering and Sciences, Austin, Texas, May 2005.
• Prudhomme, S.; Bauman, P.; and Oden, J.T. "Control of molecular statics simulations based on goal-oriented adaptivity," in Adaptive Modeling and Simulation 2005, edited by P. Diez and N.E. Wiberg, Proceedings of the Second International Conference on Adaptive Modeling and Simulation, Barcelona, Spain, 8-10 September 2005, p. 115-118, 2005.
• Prudhomme, Serge; Bauman, Paul T.; and Oden, J. Tinsley. "Error Control for Molecular Statics Problems," ICES Report 05-37, The University of Texas at Austin, Institute for Computational Engineering and Sciences, Austin, Texas, August 2005.
• Rylander, M.N.; Bass, J.; Oden, J.T.; and Diller, K.R.;. "Optimal Design of Laser Surgery for Cancer Treatment Through Nanoparticle-Mediated Hyperthermia Therapy," NSTI-Nanotech, v. 1, pp. 39-42, 2005.