Graphical User Tools

• TexMol – Molecular visualization and computation.
• VolumeRover (a.k.a VolRover) – Scalable Image Processing and Visualization Tool.
• VolRoverN – Geometric and electrophysiological neuronal simulation and visualization package.
• LBIE – Level Set Boundary-Interior-Exterior Meshing Tool.
• Prism – Geometric modeling using algebraic patches.
• GANITH – Algebraic geometry toolkit.

Software Libraries and Command-Line Utilities

• MolSurf – Molecular surface generation and manipulation.
• MolEnergy – Molecular energetics computation.
• DPG – Dynamic packing grids.
• SSEP – Secondary structure elucidation package.
• Pocket/Tunnel – Protein pocket/tunnel extractor.
• QHM – Quality Quadrilateral/Hexahedral Mesh Generator.
• QTM – Quality Triangular/Tetrahedral Mesh Generator.
• QMDM – Quality Multi-Domain Meshing with Gap
• QMDMNG – Quality Multi-Domain Meshing with No Gap
• GPU Renderer – Surface/Volume Rendering Packages.
• Shastra – X11 Based Scientific Toolkits.
• Tracing/Tiling/Tetra – Arbitrary Topology Shape Reconstruction Library from Planar Cross Sections.
• PFCorr – Polar Fourier Correlation.
• PF2Fit – Polar Fast Fourier Rigid-body Fitting.
• PF3Fit – Polar Fast Fourier Flexible Fitting.
• PMEOPA – Parallel Molecular Energetics.
• PGBFOPA – Parallel Generalized Born Force.
• TVCT– Time-varying Contour Trees.

Server Based Codes

• F2Dock – Protein docking software.
• TRLIB – Texture-based Rendering Library.
• ParIso – Fast Parallel Isosurface Rendering Library.
• MTD – Server-Client based Multi-Tiled Display Library.
• PVRC – Parallel Volume Ray Casting Library.

Earlier Codes

• MiniTexMol – Simplified Molecular Visualization Plugin for Web.
• Mini3DTexViewer – 3D Texture-based Volume Visualization Plugin for Web.