Graphical User Tools
- TexMol – Molecular visualization and computation.
- VolumeRover (a.k.a VolRover) – Scalable Image Processing and Visualization Tool.
- VolRoverN – Geometric and electrophysiological neuronal simulation and visualization package.
- LBIE – Level Set Boundary-Interior-Exterior Meshing Tool.
- Prism – Geometric modeling using algebraic patches.
- GANITH – Algebraic geometry toolkit.
Software Libraries and Command-Line Utilities
- MolSurf – Molecular surface generation and manipulation.
- MolEnergy – Molecular energetics computation.
- DPG – Dynamic packing grids.
- SSEP – Secondary structure elucidation package.
- Pocket/Tunnel – Protein pocket/tunnel extractor.
- QHM – Quality Quadrilateral/Hexahedral Mesh Generator.
- QTM – Quality Triangular/Tetrahedral Mesh Generator.
- QMDM – Quality Multi-Domain Meshing with Gap
- QMDMNG – Quality Multi-Domain Meshing with No Gap
- GPU Renderer – Surface/Volume Rendering Packages.
- Shastra – X11 Based Scientific Toolkits.
- Tracing/Tiling/Tetra – Arbitrary Topology Shape Reconstruction Library from Planar Cross Sections.
- PFCorr – Polar Fourier Correlation.
- PF2Fit – Polar Fast Fourier Rigid-body Fitting.
- PF3Fit – Polar Fast Fourier Flexible Fitting.
- PMEOPA – Parallel Molecular Energetics.
- PGBFOPA – Parallel Generalized Born Force.
- TVCT– Time-varying Contour Trees.
Server Based Codes
- F2Dock – Protein docking software.
- TRLIB – Texture-based Rendering Library.
- ParIso – Fast Parallel Isosurface Rendering Library.
- MTD – Server-Client based Multi-Tiled Display Library.
- PVRC – Parallel Volume Ray Casting Library.
Earlier Codes
MiniTexMol– Simplified Molecular Visualization Plugin for Web.Mini3DTexViewer– 3D Texture-based Volume Visualization Plugin for Web.